Total Isolates

1,184

Genomic Features

75,069

MLSTs

176

Pangenome Clusters

72,590

Study Overview

This database characterizes 1,184 UPEC genomes (filtered from 1,186 after excluding 2 duplicates) derived from human-specific isolates associated with urinary tract pathology.

The final combined dataset consists of 75,069 binary genomic predictors across 176 distinct sequence types. Genomic profiling predicted:

  • 200 Antibiotic Resistance Genes (ARGs) & point mutations
  • 269 Virulence Factors
  • 60 Plasmid Replicons
  • 05 Integrons
  • 21 Insertion Sequence families
  • 1,812 Prophages
  • 226 Serotype Determinants
  • 72,590 Unique Orthologous Gene Clusters (Pangenome)
Prokka Roary ResFinder VFDB PlasmidFinder PHASTEST ISEScan IntegronFinder

Sequence Types (Top 5)

Pangenome Structure